{
  "_id": "6ac78dc1de46216d5edd2220",
  "Package": "TopKSignal",
  "Type": "Package",
  "Title": "A Convex Optimization Tool for Signal Reconstruction from\nMultiple Ranked Lists",
  "Version": "1.0",
  "Date": "2023-12-12",
  "Authors@R": "c(person(\"Luca Vitale\", \"Developer\", role=c(\"aut\")), person(\"Bastian Pfeifer\", \"Maintainer\", role = c(\"aut\",\"cre\"), email=\"bastian.pfeifer@medunigraz.at\"), person(\"Michael G. Schimek\", \"Supervision\", role=c(\"aut\")))",
  "Description": "A mathematical optimization procedure in combination with\nstatistical bootstrap for the estimation of the latent signals\n(sometimes called scores) informing the global consensus\nranking (often named aggregation ranking). To solve\nmid/large-scale problems, users should install the 'gurobi'\noptimiser (available from <https://www.gurobi.com/>).",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "RoxygenNote": "7.2.3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "cmake libicu-dev",
  "Repository": "https://pievos101.r-universe.dev",
  "Date/Publication": "2023-12-21 21:31:26 UTC",
  "RemoteUrl": "https://github.com/pievos101/topksignal",
  "RemoteRef": "HEAD",
  "RemoteSha": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
  "Packaged": {
    "Date": "2026-10-08 12:30:54 UTC",
    "User": "root"
  },
  "Author": "Luca Vitale Developer [aut],\nBastian Pfeifer Maintainer [aut, cre],\nMichael G. Schimek Supervision [aut]",
  "Maintainer": "Bastian Pfeifer Maintainer <bastian.pfeifer@medunigraz.at>",
  "_user": "pievos101",
  "_type": "src",
  "_file": "TopKSignal_1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/fdfefda1d9e866d25c578b69fe38e7ffd9b88e512b41c8349acad608fb871e97",
  "_filesize": 230825,
  "_sha256": "fdfefda1d9e866d25c578b69fe38e7ffd9b88e512b41c8349acad608fb871e97",
  "_expires": "2027-01-16T12:34:07.000Z",
  "_created": "2026-10-08T12:30:54.000Z",
  "_published": "2026-10-08T12:34:08.700Z",
  "_buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113311792005,
      "time": 141,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11550931094"
    },
    {
      "job": 113311791789,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11550307565"
    },
    {
      "job": 113311791664,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11551530571"
    },
    {
      "job": 113311791703,
      "time": 128,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11550586347"
    },
    {
      "job": 113310527240,
      "time": 179,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11550810574"
    },
    {
      "job": 113311791875,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11550720989"
    },
    {
      "job": 113311792906,
      "time": 93,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11551140620"
    },
    {
      "job": 113311791893,
      "time": 114,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11550905987"
    },
    {
      "job": 113311791829,
      "time": 103,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11550397126"
    }
  ],
  "_upstream": "https://github.com/pievos101/topksignal",
  "_commit": {
    "id": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
    "author": "bastian <bastianxpfeifer@gmail.com>",
    "committer": "bastian <bastianxpfeifer@gmail.com>",
    "message": "adding examples\n",
    "time": 1703194286
  },
  "_maintainer": {
    "name": "Bastian Pfeifer Maintainer",
    "email": "bastian.pfeifer@medunigraz.at",
    "login": "pievos101",
    "description": "Bioinformatics, Machine Learning ",
    "uuid": 36030386
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "nloptr",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "gurobi",
      "role": "Suggests"
    }
  ],
  "_owner": "pievos101",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "convex-optimization",
    "ranking-data",
    "signal-estimation"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "pievos101",
      "count": 40,
      "uuid": 36030386
    }
  ],
  "_userbio": {
    "uuid": 36030386,
    "type": "user",
    "name": "Bastian Pfeifer",
    "followers": 37,
    "description": "Bioinformatics, Machine Learning "
  },
  "_downloads": {
    "count": 228,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TopKSignal"
  },
  "_devurl": "https://github.com/pievos101/topksignal",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TopKSignal.html"
  ],
  "_homeurl": "https://github.com/pievos101/topksignal",
  "_realowner": "pievos101",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2024-01-08"
    }
  ],
  "_exports": [
    "elbowPlot",
    "estimateTheta",
    "generate.rank.matrix",
    "heatmapPlot",
    "violinPlot"
  ],
  "_datasets": [
    {
      "name": "estimatedSignal",
      "title": "Object returned by the estimateTheta() function.",
      "object": "estimatedSignal",
      "file": "estimatedSignal.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "elbowPlot",
      "title": "elbowPlot",
      "topics": [
        "elbowPlot"
      ]
    },
    {
      "page": "estimatedSignal",
      "title": "Object returned by the estimateTheta() function.",
      "topics": [
        "estimatedSignal"
      ]
    },
    {
      "page": "estimateTheta",
      "title": "Estimation of the underlying signal.",
      "topics": [
        "estimateTheta"
      ]
    },
    {
      "page": "generate.rank.matrix",
      "title": "generate.rank.matrix",
      "topics": [
        "generate.rank.matrix"
      ]
    },
    {
      "page": "heatmapPlot",
      "title": "Heatmap noise matrix plot",
      "topics": [
        "heatmapPlot"
      ]
    },
    {
      "page": "TopKSignal",
      "title": "TopKSignal: A convex optimization tool for signal reconstruction from multiple ranked lists.",
      "topics": [
        "TopKSignal"
      ]
    },
    {
      "page": "violinPlot",
      "title": "violinPlot",
      "topics": [
        "violinPlot"
      ]
    }
  ],
  "_pkglogo": "https://github.com/pievos101/topksignal/raw/HEAD/logo.png",
  "_readme": "https://github.com/pievos101/topksignal/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "doParallel",
    "farver",
    "foreach",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "iterators",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "nloptr",
    "plyr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "reshape2",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "TopKSignal.Rmd",
      "filename": "TopKSignal.html",
      "title": "TopKSignal: A convex optimization tool for signal reconstruction from multiple ranked lists",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Package installation",
        "Introduction",
        "The optimization tool gurobi",
        "Input format",
        "The convex optimization problem",
        "The full approach",
        "The restricted approach",
        "The minimization term",
        "Estimating the latent signals from multiple ranked lists",
        "Plots"
      ],
      "created": "2021-08-30 08:00:41",
      "modified": "2023-12-21 19:39:26",
      "commits": 10
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "topksignal",
  "_universes": [
    "pievos101"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0",
      "date": "2026-10-08T12:32:57.000Z",
      "distro": "resolute",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/5fb675470d62147f833407be8d6b1a0fe93acce39ff6ed844cd270318dfb2a66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0",
      "date": "2026-10-08T12:32:56.000Z",
      "distro": "resolute",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/39878b52e4ae901a5a6194e9a6a6ee69024ebab180359ad2ec6f3dade7e2b50c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0",
      "date": "2026-10-08T12:33:15.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/7bbaf33499f680fe2cdd1233be7f89f2e59b428a8444b48595a3ef3f9adacdc9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0",
      "date": "2026-10-08T12:33:08.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/b3a7a2754b601d50b1ccf35312d2e2631cb41e7d986f1c01c5708ed8eb310073",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0",
      "date": "2026-10-08T12:33:08.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/c37bef99788a8d9c82957580a77a2fca655af053421aea5bd577404d6421cf5b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0",
      "date": "2026-10-08T12:32:17.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/67c996f8274a909f3e9a393b33351d74a2750b0e6ccf24fc2dbda167a90ea696",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0",
      "date": "2026-10-08T12:32:24.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/ec2e68a49cacac5ed0a4120e74735e05bac14556df0bac75fd095ad6c859854f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0",
      "date": "2026-10-08T12:32:17.000Z",
      "commit": "bf0c6d310fb7c03916bab38cae18deae668d6fc2",
      "fileid": "https://r2.ropensci.org/09cd3cc91ffcffe980704d5b21ef0ceab988cc43020c1efb520bd17626e2b143",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pievos101/actions/runs/37777025454"
    }
  ]
}